Posts by Speedy

1) Message boards : News : Summer break (Message 3339)
Posted 15 Dec 2023 by Speedy

l008com, to answer your question in a nutshell "new work will be available" when an experiment has work to process. In regards to when this will be I have no idea, we will know when it appears in our work queues :-)

2) Message boards : Number crunching : OUT of tasks (Message 3234)
Posted 29 May 2023 by Speedy

I dedicate 50% threads to BOINC (WCG/SiDock/Rosetta/TN-Grid) and 50% to Stockfish Fishtest chess.

To achieve using 50% CPU time boinc do you use preferences "50% of the CPUs"? I also send you a PM

I don't know about Intel vs AMD but it does prefer Linux. 10-15% faster IIRC.

Yes I completely agree a lot of application related to boinc like Linux. Contrary to this I have a feeling that the current project "Vitis vinifera" appears to run under 3 hours on Windows times given were before they increase work unit size. Previous project ran for over 3 hours most of the time

3) Message boards : Number crunching : OUT of tasks (Message 3228)
Posted 28 May 2023 by Speedy

Thank you for all the information very interesting

That means: if you want your (single-threaded) science application to run as fast as it could, don't use more than 50% of your CPUs for this purpose.
The 12th and 13th gen Intel CPUs have E-Cores, which don't have the necessary resources to run TN-Grid (and similar scientific) applications, so the percentage of the usable "CPUs" (threads in reality) on these CPUs are even lower (34% on i9-12xxx, 25% on i9-13xxx).
Look at these two i9-13900k's:
https://gene.disi.unitn.it/test/results.php?hostid=86237&offset=0&show_names=0&state=4&appid= Run time: 1h 37m CPU time: 1h 8m, 1 error
https://gene.disi.unitn.it/test/results.php?hostid=86238&offset=0&show_names=0&state=4&appid= Run time: 1h 34m CPU time: 1h 6m, many errors

Yes I agree the bottom host as many "errors" although they are classed as this I wouldn't call them "errors" because the 1st 20 at least are "abandoned" which to me just means "aborted by user" because the 2 tasks have been returned in one example I checked

4) Message boards : Number crunching : OUT of tasks (Message 3223)
Posted 27 May 2023 by Speedy

I'm glad that I have a better than ideal computer, as my i9-12900F can do one workunit in 35 minutes :)

Nice time for a work unit. I have a Ryzen 3900 X and it takes over an hour to do a work unit. Perhaps this project prefers Intel. Using only your performance cores assuming you can get in case you can return 13.76 results in hour. Maths to get that is: 8×1.72

5) Message boards : Number crunching : OUT of tasks (Message 3192)
Posted 22 May 2023 by Speedy

I think it's a good time to start now, and keep doing so until we have at least 10k work units available for download. This will allow to finish the V. Vinefera project in only a few months.

It may allow us to finish the project in a few months. I believe there is not the storage to be able to make and store that many work units & results without putting too much pressure on the system TN grid is using the time the project.

6) Message boards : Science : Homo Sapiens (OneGenE - FANTOM-1) - End (Message 3144)
Posted 19 Apr 2023 by Speedy

Any results that need to be sent out again will be sent out when the deadline is reached/past for the current results that are out in the field.

7) Message boards : Science : Spinal muscular atrophy (SMA) from Mus musculus (Message 3141)
Posted 18 Apr 2023 by Speedy

Once these "mouse" related tasks start, do we have any idea of the project time?

8) Message boards : News : Storage problem (again) (Message 3110)
Posted 16 Mar 2023 by Speedy

Thanks for confirming what was happening with the word generator. I have to agree everything seems to be running a lot nicer currently on the old server :-)
Out of curiosity when the move to new server happens what will happen with work that is currently being processed?

9) Message boards : News : Storage problem (again) (Message 3105)
Posted 9 Mar 2023 by Speedy

Meanwhile the work generator will be active just a few hours a day, so very few workunits will be available.
Thank you all for your understanding and patience.

By the looks of things the server is coping well with the amount of work ready to send (17,636), a lot of work can be produced considering the "work generator" is only "running a few hours a day" Currently 56,087 result are being processed :-) Your welcome, happy to wait until project has moved to new hardware before a process more work.

10) Message boards : Science : Spinal muscular atrophy (SMA) from Mus musculus (Message 3077)
Posted 6 Feb 2023 by Speedy

I managed to pick up 2 tasks and then ran for 31 and 32 minutes respectively on a Ryzen 9 5900 X running Windows 11 pro 2200 version. These were _2 &_3 tasks looks like I was used as a checker both my tasks validated

11) Message boards : Science : Spinal muscular atrophy (SMA) from Mus musculus (Message 3072)
Posted 2 Feb 2023 by Speedy

Nice looking forward to it

12) Message boards : Science : Tn-Grid future plans? (Message 3070)
Posted 27 Jan 2023 by Speedy

I agree it would be good, do we know what the final expansion list is going to be?

13) Message boards : Science : Tn-Grid future plans? (Message 3059)
Posted 12 Jan 2023 by Speedy

Have you seen https://gene.disi.unitn.it/test/forum_thread.php?id=207 I asked a similar question and got the following answer on April 8, 2022 at 14:44:38 UTC from valterc Message 2624

The main goal right now is to finish the FANTOM-1 experiment. Alongside there will be another dataset of Vitis vinifera. We are planning to do new experiments, either with other datasets or organisms. We are also evaluating the feasibility to do something with Single-cell transcriptomics data.

Very interesting message!!
But it's april 2022, so we don't know if plas are changed.
Meantime, we crunch!

Yes you are correct we don't know if plans have changed.

I took the message to read as if we would be running mentioned work after the current work has been completed.

This would mean mentioned experiments above would start around in the beginning of April 2023

14) Message boards : Science : Tn-Grid future plans? (Message 3051)
Posted 7 Jan 2023 by Speedy

Have you seen https://gene.disi.unitn.it/test/forum_thread.php?id=207 I asked a similar question and got the following answer on April 8, 2022 at 14:44:38 UTC from valterc Message 2624

The main goal right now is to finish the FANTOM-1 experiment. Alongside there will be another dataset of Vitis vinifera. We are planning to do new experiments, either with other datasets or organisms. We are also evaluating the feasibility to do something with Single-cell transcriptomics data.

15) Message boards : Number crunching : Completed work not uploading (Message 3038)
Posted 22 Dec 2022 by Speedy

All of my work has uploaded yesterday I think I something like 33 results waiting

16) Message boards : Science : Crosstalk between epitranscriptomic and histone modifications in LUAD (Message 3032)
Posted 15 Dec 2022 by Speedy

Fantastic to hear that your students are working with the result. Hopefully we can be of assistance to you in the future by providing students with more results. Unfortunately I wasn't lucky enough to get 1 of thee your student result

17) Message boards : Science : Crosstalk between epitranscriptomic and histone modifications in LUAD (Message 3022)
Posted 27 Nov 2022 by Speedy

Ellisa thanks for letting us know. I look forward to trying to get a task. Do you have any idea how long your research will run for?

18) Message boards : Science : Spinal muscular atrophy (SMA) from Mus musculus (Message 2920)
Posted 2 Oct 2022 by Speedy

Looking forward to contributing to this project

19) Message boards : Number crunching : OUT of tasks (Message 2847)
Posted 27 Aug 2022 by Speedy

Thanks for the information. I couldn't agree with you more Tim about helping their project out in the short term. In saying this I am currently not running any tasks

20) Message boards : Number crunching : SSE2 with app_info? (Message 2813)
Posted 7 Aug 2022 by Speedy

Can you run SSE2 on a Windows AMD PC and does anybody know if it brings the runtime down from around 3 hours? On a AMD 5900 X CPU

Next 20