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Message boards : Science : The new Vitis vinifera project is underway
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Dear all, I am very excited to announce that a new bigger dataset of Vitis vinifera transcriptomic data (Vespucci) is now available for OneGene expansion. The number of experiments has more than tripled. We are still using the results from the previous analyses, finding very interesting gene associations and producing amazing gene networks. We now expect to improve and refine them with this new collection of runs. Many thanks to all of you. | |
ID: 3164 · ![]() | |
Thanks for the update. | |
ID: 3165 · ![]() | |
By now I just put a few genes into the queue, if everything goes well I will switch to full throttle this Monday, also adding the progress counter. | |
ID: 3166 · ![]() | |
By now I just put a few genes into the queue, if everything goes well I will switch to full throttle this Monday, also adding the progress counter. Thank you. ____________ ![]() | |
ID: 3167 · ![]() | |
Up to now, no error or invalid validation | |
ID: 3170 · ![]() | |
I crunched a few, (8), work units from the test batch on the 12th which all ran to normal completion. Since then, I've not received any. | |
ID: 3172 · ![]() | |
How many WUs are in a gene/isoform and is the last one short like the previous project? | |
ID: 3174 · ![]() | |
A single gene expansion is made up by 77 workunits, each one contains 800 small computational chunks (PCs), the last one (#77) contains just 400 of them. (I may change the numbers of chunks per workunit in the future) | |
ID: 3175 · ![]() | |
A single gene expansion is made up by 77 workunits, each one contains 800 small computational chunks (PCs), the last one (#77) contains just 400 of them.So a single gene expansion is 76*800+400 chunks, that is 61200 chunks in total. 61200 | 2
30600 | 2
15300 | 2
7650 | 2
3825 | 3
1275 | 3
425 | 5
85 | 5
17 | 17
1 | There are a few numbers around 800 that can divide 61200 to equal sized workunits: 816*75 (17*3*2*2*2*2)*(5*5*3)
850*72 (17*5*5*2)*(3*3*2*2*2)
900*68 (5*5*3*3*2*2)*(17*2*2) But it is desirable to make longer workunits (to be able to generate enough work for all hosts), if it does not take longer for the workunit generator(you should reduce the maximum allowed workunits at the same time to prevent hoarding): 1020*60 (17*5*3*2*2)*(5*3*2*2)
1200*51 (5*5*3*2*2*2*2)*(17*3)
1224*50 (17*3*3*2*2*2)*(5*5*2)
1275*48 (17*5*5*3)*(3*2*2*2*2)
1360*45 (17*5*2*2*2*2)*(5*3*3)
1530*40 (17*5*3*3*2)*(5*2*2*2)
1700*36 (17*5*5*2*2)*(3*3*2*2)
1800*34 (5*5*3*3*2*2*2)*(17*2) So I would change the workunit size according to the end of this list. | |
ID: 3199 · ![]() | |
Sorry for that, but I made a mistake in my previous statement... it's not 800 but 600 | |
ID: 3200 · ![]() | |
Message boards :
Science :
The new Vitis vinifera project is underway