Posts by Jim1348
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1) Message boards : Number crunching : OUT of tasks (Message 2950)
Posted 26 Oct 2022 by Jim1348
It shows 0 now, though maybe a few are still being generated. And Rosetta is out too. It is time for me to convert another machine to Folding.
2) Message boards : Science : SARS-CoV-2 virus (Message 2906)
Posted 25 Sep 2022 by Jim1348
“We used to say we have the tools,” he said. “The tools are getting picked off.”

https://fortune.com/well/2022/09/24/new-covid-omicron-variants-subvariants-evade-monoclonal-antibodies-bebtelovimab-recombinants-convergent-evolution-sars-immune-evasion/
3) Message boards : Science : SARS-CoV-2 virus (Message 2882)
Posted 14 Sep 2022 by Jim1348
COVID-19 mutations accelerated by virus-fighting enzyme in human cells
Researchers have found the first experimental evidence explaining why the COVID-19 virus produces variants, such as delta and omicron, so quickly. The findings, published Sept. 13 in the journal Scientific Reports, could help scientists predict the emergence of new coronavirus strains and possibly even produce vaccines before those strains arrive.

The relatively rapid emergence of multiple COVID-19 virus variants has baffled researchers because most coronaviruses don’t mutate and evolve so quickly. That’s because they possess a built-in “proofreading” mechanism to prevent mutations as they make copies of themselves while growing and multiplying in our cells. But scientists at USC figured out the COVID-19 virus’ strategy for bypassing the proofreading: It hijacks enzymes within human cells that normally defend against viral infections, using those enzymes to alter its genome and make variants.

https://dornsife.usc.edu/news/stories/3758/covid-19-variants-caused-by-virus-fighting-enzyme/
4) Message boards : Number crunching : OUT of tasks (Message 2846)
Posted 27 Aug 2022 by Jim1348
Even though it looks bad, I am still getting work.
If it helps the project, that is OK, but I would not want a long dry spell either.
5) Message boards : Number crunching : OUT of tasks (Message 2839)
Posted 26 Aug 2022 by Jim1348
Tasks ready to send 0

I will be out of work in four hours.
6) Message boards : Science : SARS-CoV-2 virus (Message 2829)
Posted 18 Aug 2022 by Jim1348
Researchers discover 'weak spot' across major COVID-19 variants

Researchers have discovered a key vulnerability across all major variants of the SARS-CoV-2 virus, including the recently emerged BA.1 and BA.2 Omicron subvariants. The weakness can be targeted by neutralizing antibodies, potentially paving the way for treatments that would be universally effective across variants.

https://www.sciencedaily.com/releases/2022/08/220818091240.htm
7) Message boards : Number crunching : SSE2 with app_info? (Message 2816)
Posted 7 Aug 2022 by Jim1348
My point is energy efficiency, not run time.

It won't change it that much, a few watts. Anything in your system will use more. Do you have high-efficiency power supplies?

(It will take more than that to save the Louisiana Purchase anyway.)
8) Message boards : Number crunching : SSE2 with app_info? (Message 2814)
Posted 7 Aug 2022 by Jim1348
Can you run SSE2 on a Windows AMD PC and does anybody know if it brings the runtime down from around 3 hours? On a AMD 5900 X CPU

The best I can tell you is that running the fma on a Ryzen 5950X under Ubuntu 20.04.4 takes 2 hours 27 minutes. And SSE2 is a little slower than that, while as I recall Windows is a little slower than Linux, but not by too much.

I think 3 hours is about what you should expect.
9) Message boards : Number crunching : OUT of tasks (Message 2800)
Posted 31 Jul 2022 by Jim1348
Well, by driving it is more than 440Km (fastest route, around 4 hours)

I have other criteria. I was at Aviano Air Base for two years, which is approximately half-way between them. It is geographically balanced for me.
10) Message boards : Number crunching : OUT of tasks (Message 2796)
Posted 31 Jul 2022 by Jim1348
I run it along with SiDock. Ljubljana is 265 km due east of Trento.
It makes for a geographically-balanced machine.
11) Message boards : Science : Miscellaneous gene-related news (Message 2785)
Posted 24 Jul 2022 by Jim1348
CRISPR gene editing may cause permanent damage - study

Scientists at Tel Aviv University (TAU) warn that while the CRISPR genome-editing method is very effective, it is not always safe and that sometimes, rearranging pieces of DNA compromises genomic stability, possibly triggering cancer in the long run.

https://www.jpost.com/health-and-wellness/article-712930
12) Message boards : Number crunching : SSE2 with app_info? (Message 2783)
Posted 22 Jul 2022 by Jim1348
And France and Spain and Greece and England and …

I know. It is a big problem.
13) Message boards : Science : Miscellaneous gene-related news (Message 2781)
Posted 22 Jul 2022 by Jim1348
Researchers find biomarker that could enable screening for all cancers

The release of a protein produced by the gene KRAS creates a biomarker that doctors can detect.

https://www.jpost.com/health-and-wellness/article-712798
14) Message boards : Number crunching : SSE2 with app_info? (Message 2780)
Posted 22 Jul 2022 by Jim1348
A good point, but FMA is working for me well enough.
It is mainly west of the Mississippi River that they have the problems.

We may need to give up the Louisiana Purchase.
15) Message boards : Science : SARS-CoV-2 virus (Message 2765)
Posted 11 Jul 2022 by Jim1348
BA.2.75: A Dark Horse In The Covid Pandemic

To have such unique mutations at this stage of the pandemic when the virus has mutated into hundreds, even thousands of competing strains is astounding. These mutations likely have health officials on high alert, as a wealth of new mutations could indicate increased transmissibility or immune evasion if the variant catches fire like its predecessor.

https://www.forbes.com/sites/williamhaseltine/2022/07/11/ba275-a-dark-horse-in-the-covid-pandemic/?sh=3de22fa55985

That is interesting.
16) Message boards : Number crunching : SSE2 with app_info? (Message 2741)
Posted 24 Jun 2022 by Jim1348
We just started another heat wave here. Do you have a feel for the percent Wattage reduction?

No, I just look at the temp. I was running on all cores of a Ryzen 3950X, and it was getting up to 84C, which is near the danger zone when I pick up errors. I like to keep it below 80C.

But for the moment, I have achieved that by under-volting and setting the clock speed to what it can handle. I am now good at 77C even with the fma when running at 3900 MHz and 1.25000 volts on the CPU (each chip is different as you know). However, I know from past experience that SSE2 will run several degrees cooler with only a small loss in performance, if I need it. It probably is only a 5 watt difference in power on that chip though.
17) Message boards : Number crunching : SSE2 with app_info? (Message 2737)
Posted 24 Jun 2022 by Jim1348
... also do a "chmod a+x"

Thanks. That is what I was missing. I had done the other stuff.
18) Message boards : Number crunching : SSE2 with app_info? (Message 2734)
Posted 22 Jun 2022 by Jim1348
I would like to run the SSE2 version rather than the fma version on a Linux (Ubuntu 20.04.4) machine for reduced heat production.

Is there an app_info that can accomplish that? I only see one for avx.
19) Message boards : Science : SARS-CoV-2 virus (Message 2726)
Posted 20 Jun 2022 by Jim1348
Blood Test Aims to Measure COVID Immunity

A small blood sample and 24 hours might be all that's needed to find out how strong your immune system is against a first or repeat coronavirus infections. Scientists created a test that indirectly measures your T-cell response -- an important, long-term component of immunity that can last long after antibody levels fall off – to a challenge by the virus in whole blood
.
https://www.webmd.com/lung/news/20220615/blood-test-aims-to-measure-covid-immunity
https://www.nature.com/articles/s41587-022-01347-6
20) Message boards : Science : SARS-CoV-2 virus (Message 2684)
Posted 28 May 2022 by Jim1348
What will be the next variant of COVID-19, according to science

Scientists from the Broad Institute of MIT and Harvard and the University of Massachusetts Medical School, in the United States, developed a “machine learning” model that can analyze millions of genomes from coronavirus samples and predict which viral variants will dominate and likely cause new waves. The model was called PyR0 and could help researchers identify which parts of the viral genome are least likely to mutate. and thus are good targets for vaccines that will work against future variants. The results were published in the journal Science.

https://argentina.detailzero.com/news/3258/What-will-be-the-next-variant-of-COVID-19-according-to-science.html


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