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1)
Message boards :
Science :
SARS-CoV-2 virus
(Message 1886)
Posted 8 Jul 2020 by ![]() Scientists discovered that genes SLC6A20, LZTFL1, CCR9, FYCO1, CXCR6, and XCR1 are associated with severe COVID-19 cases: https://www.physiciansbriefing.com/infectious-disease-8/coronavirus-1008/genomewide-level-associations-identified-for-severe-covid-19-758771.html https://www.nejm.org/doi/full/10.1056/NEJMoa2020283 |
2)
Message boards :
Number crunching :
SSE3 optimization and Android binary
(Message 1844)
Posted 18 May 2020 by ![]() You have to put in the project's director an app_info.xml file with the name of your executable and then restart boinc. AARCH64 apps for Android always are PIE and have NEON enabled. |
3)
Message boards :
Number crunching :
SSE3 optimization and Android binary
(Message 1832)
Posted 17 May 2020 by ![]() It looks that bzip2 library was build with -D_FORTIFY_SOURCE, which is not supported by glibc on Android. You need to rebuild bzip2 with this flag disabled. Here is related question on StackOverflow: https://stackoverflow.com/questions/22977898/android-4-4-undefined-reference-to-printf-chk |
4)
Message boards :
Number crunching :
Please fix computer #57018 - only invalids!
(Message 1802)
Posted 22 Apr 2020 by ![]() You can limit number of WUs sent to hosts which returned high number of invalid WUs recently. Limit of 1 WU per host and scheduler request delay set to 12h should reduce this problem a lot. I never tried to setup my own server, so I do not know exactly how to do this. Out of curiosity I tried to search for this, and found that you can set <reliable_priority_on_over> and <reliable_priority_on_over_except_error> options in project settings, they may do the trick. Reference: https://boinc.berkeley.edu/trac/wiki/ProjectOptions#Acceleratingretries I also found that you can blacklist a host by setting its max_results_day field to -1. You can use this to ban hosts which return invalid results only. Reference: https://boinc.berkeley.edu/trac/wiki/BlackList |
5)
Message boards :
Number crunching :
Please fix computer #57018 - only invalids!
(Message 1799)
Posted 22 Apr 2020 by ![]() You can limit number of WUs sent to hosts which returned high number of invalid WUs recently. Limit of 1 WU per host and scheduler request delay set to 12h should reduce this problem a lot. |
6)
Message boards :
Number crunching :
SSE3 optimization and Android binary
(Message 1791)
Posted 19 Apr 2020 by ![]() Yes, this is known issue in BOINC. You need to manually copy config.h file from boinc source root dir to InstallPath/include/boinc after installing all files. Or if you use files from directly from boinc build dir, add /home/matteo/Software/boinc/ to include paths. You can also modify this parse.h to use #include "../config.h". |
7)
Message boards :
Number crunching :
SSE3 optimization and Android binary
(Message 1780)
Posted 17 Apr 2020 by ![]() I built Android apps in the past, here is link to my post with more details: http://gene.disi.unitn.it/test/forum_thread.php?id=158&postid=905#905 I did this by taking crosscompiler from Android NDK and connected it to existing Makefiles used for building project app. I found these makefles. Here are important parts of them: From Makefile for 32-bit Android app: ARCH += -march=armv7-a -mtune=cortex-a7 -mfpu=vfpv4 -mfloat-abi=softfp
LDFLAGS += -Wl,--fix-cortex-a8
PIE ?= 0
$(info Using PIE=$(PIE))
ifeq ($(PIE),1)
CFLAGS += -fPIE
LDFLAGS += -fPIE -pie
BOINC_DIR = ../../_boinc32pie/
else
LDFLAGS += -fno-PIE -no-pie
BOINC_DIR = ../../_boinc32nonpie/
endif
TOOLPATH = ../../$(TOOLDIR)
CFLAGS = --sysroot=c:/tn-grid/android/_arm32/sysroot/ -DANDROID -DDECLARE_TIMEZONE -Ic:/tn-grid/android/_arm32/include/c++/4.9.x/arm-linux-androideabi/
LDFLAGS = --sysroot=c:/tn-grid/android/_arm32/sysroot/
CC = ../../_arm32/bin/arm-linux-androideabi-gcc
CXX = ../../_arm32/bin/arm-linux-androideabi-g++
From Makefile for 64-bit Android app: CFLAGS = --sysroot=c:/tn-grid/android/_arm64/sysroot/ -DANDROID -DANDROID_64 -DDECLARE_TIMEZONE -fPIE
LDFLAGS = --sysroot=c:/tn-grid/android/_arm64/sysroot -fPIE -pie
CC = ../../_arm64/bin/aarch64-linux-android-gcc
CXX = ../../_arm64/bin/aarch64-linux-android-g++
BOINC_DIR = ../../_boinc64/
I used these Makefiles from Cygwin. I hope that this will help you. In Makefile for 32-bit app I has to use -mfloat-abi=softfp instead of -mfloat-abi=hard. This was required by Android. You can check if is is possible now, otherwise app will be slower than corresponding ARM Linux app. |
8)
Message boards :
Number crunching :
TN-Grid on AMD GPUs
(Message 1779)
Posted 17 Apr 2020 by ![]() Thanks for the positive feedback. I have good and bad news. I am author of optimized apps used by TN-Grid now. I also tried to port app to the GPU, but faced the same problem - global memory access was too slow. If I remember correctly, I tried to port app version which does not use Gray codes (predecessor of current app version), it looked more GPU-friendly for me. I was looking for potential solution for this slow memory access, and asked for algorithm on StackOverflow. I got an answer, however I never actually tried to implement it - I was busy with different things at that time. Here is link to that question, I hope it will be useful for you. Good luck! https://stackoverflow.com/questions/46635137/how-to-generate-combinations-in-chunks |
9)
Message boards :
Number crunching :
sse2 vs avx
(Message 1448)
Posted 18 Dec 2018 by ![]()
Interesting. I have followed link on task info page to get info about CPU and OS, so looks that sometimes crashes occur on 2700 too. Unfortunately today this task page is deleted so I cannot add link here. Anyway, I will update my report that bug happens mostly on 1700. |
10)
Message boards :
Number crunching :
sse2 vs avx
(Message 1445)
Posted 17 Dec 2018 by ![]() had to abort sse2 after 10 hours but with 442 days remaining. there were no other cpu tasks running other then this project. Looking HERE sse2 and avx had same problem but fma and an anon succeeded. wonder what the "anon" was. Hello again, I was not here for long long time :) This looks like another Ryzen bug. This time CPU also jumps to address in middle of instruction, what must end in crash sooner or later. I have reported this bug on AMD forum. Here is link to my post, it should be visible soon when moderator approves it: https://community.amd.com/message/2890585 |
11)
Message boards :
Number crunching :
Optimization
(Message 1227)
Posted 14 Dec 2017 by ![]() How is your RAM-Speed? There is no tool to see it. Intel support also claims that this cannot be measured. That person found this by performing series of tests: - when he decreased CPU clock, CPU usage raised to 100%; - when he decreased memory clock, CPU usage dropped to 85%; - when he added 3rd memory stick, CPU usage increased from 90% to 100%. |
12)
Message boards :
Number crunching :
Optimization
(Message 1223)
Posted 12 Dec 2017 by ![]() How is your RAM-Speed? TN-Grid app is very memory-intensive. One person from my team wrote that on his Xeon 14c/28t (I do not know exact model, probably it is E5-2683 v3) 4 TN-Grid WUs consumed all available memory bandwidth. So when you hit this limit, increasing CPU speed will not help, it will faster wait for memory ;) Edit: when you set CPU usage to 50%, app will be able to get data from memory faster (less apps will compete for the same limited bandwidth), every app instance could use more cache (additionally helping with loading data), plus CPU resources will not be shared between two apps (SMT/HT does not improve speed twice, usually it is much less). If you want to improve speeds, use fastest possible memory, and overclock it if possible. |
13)
Message boards :
Number crunching :
Server Status - No Work Available
(Message 1216)
Posted 7 Dec 2017 by ![]() The server status page is showing no work units available for download as of I have checked server status page and saw interesting thing: Users registered in past 24 hours: 1 Someone with big computing cloud has joined. No wonder that work queue is empty. |
14)
Message boards :
Wish List :
Future requests
(Message 1199)
Posted 16 Nov 2017 by ![]() Can we possibly make the latest apps from Daniel the official versions? Haven't they been out for about 6 months? Unfortunately I do not have access to machine with MacOS, so I cannot help here. In the past MacOS apps were created by TN-Grid people. |
15)
Message boards :
Number crunching :
Optimization
(Message 1157)
Posted 24 Oct 2017 by ![]() I saw many users are running v 1.03 Official 1.0x apps are the same as Opti v.1.1 ones. Opti v.1.2 apps are not officially added yet. |
16)
Message boards :
News :
Another experiment on E. coli
(Message 1155)
Posted 24 Oct 2017 by ![]() Could I take a look on code of your work generator and some sample input data? I wonder if I could optimize it a bit. No problem, I know Python too :) BTW, have you tried to use PyPy (https://pypy.org/) or something like this? |
17)
Message boards :
News :
Another experiment on E. coli
(Message 1153)
Posted 24 Oct 2017 by ![]() Could I take a look on code of your work generator and some sample input data? I wonder if I could optimize it a bit. |
18)
Message boards :
Wish List :
Future requests
(Message 1144)
Posted 23 Oct 2017 by ![]() Now the project is beta but, in the future, may be stable and public Small update from my side: I am working on OpenCL app. It turned out that for L=0 and L=1 graph edges must be processed in parallel (this part is ready). For higher L amount of per-edge work is higher, so app will process edges in a serial way, and parallelize work for every one of them. Also for higher L bandwidth of global GPU memory becomes major performance bottleneck, I am looking for solution for this problem. I will let you know when I will have something ready for public testing. |
19)
Message boards :
Number crunching :
FMA problems (Ryzen and others?)
(Message 1102)
Posted 29 Jul 2017 by ![]() Looks that TN-Grid app causes some new bug on Ryzen CPUs, which is not fixed yet. I have created post on AMD forum to let them know about it: https://community.amd.com/message/2814366 |
20)
Message boards :
Number crunching :
Optimization
(Message 1070)
Posted 21 May 2017 by ![]() I asked rattorosso [Marche] to create apps for remaining 3 ARM architectures: armv6_vfp, armv7_vfpv3 and aarch64. He send them to me, and I uploaded them in usual place: https://bitbucket.org/sirzooro/pc-boinc/downloads/. Feel free to download and test them too. So....what is the difference between default app which i download automatic (for example gene_pcim_v1.02_win64__fma) and the same one fma from the link and the archive? If i saw right both are version 1.02? Which one i must use for better performance? Both internally specify the same version 1.02, but version from this thread has extra optimizations so it runs faster than official one. Valterc is going to take it and release as a new version of official one at end of May. |