gene@home: Parameters tuning reloaded
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Profile NadirS [SSC11]
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Message 403 - Posted: 8 May 2014, 9:38:09 UTC

We have scheduled more than 10000 (ten thousands! :) ) workunits for a second phase of parameters tuning.
We are trying different parameters' values, hence the time estimation could be not always correct.
As usual use the forum if there are any problems.

Have a nice work!
Thank you all!

Profile [VENETO] boboviz
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Message 405 - Posted: 9 May 2014, 9:04:27 UTC - in response to Message 403.

As usual use the forum if there are any problems.


Over 20 wus ok, only 1 "validation inconclusive"
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Message 406 - Posted: 9 May 2014, 13:35:48 UTC - in response to Message 405.

State: All (306) · In progress (110) · Validation pending (43) · Validation inconclusive (0) · Valid (153) · Invalid (0) · Error (0)

Profile FrancescoAsnicar [SSC11]
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Message 412 - Posted: 14 May 2014, 8:39:26 UTC

To the initial work programmed for this second phase of parameters tuning, we added a quite big deal of experiments.
In fact, at the end of the last week we received a new local gene network related to flavonoids. This was a good news because we can expand this new local gene network using the same input used for the first local gene network (FOS), since both of them are related to the flowering of the Arabidopsis thaliana.

We posted a gif of the most significant plots we obtained from the first phase of parameters tuning here: http://gene.disi.unitn.it/test/forum_thread.php?id=85

Enjoy!
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Profile [VENETO] boboviz
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Message 414 - Posted: 16 May 2014, 7:28:20 UTC - in response to Message 412.

We posted a gif of the most significant plots we obtained from the first phase of parameters tuning here: http://gene.disi.unitn.it/test/forum_thread.php?id=85


I really like scientific news!!
Good job, boys!

Profile FrancescoAsnicar [SSC11]
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Message 418 - Posted: 22 May 2014, 14:44:08 UTC - in response to Message 412.

In order to validate our algorithm, we started several experiments, friendly called "empty" (because they didn't have a local gene network that will be expanded).
These experiments should tell us the impact of the "divide-et-impera" approach performing inference, with respect to the expansion done within every subgraphs.
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