Comparing the two Vitis OneGenE expansion results: focus on Vespucci normalization
log in

Advanced search

Message boards : Science : Comparing the two Vitis OneGenE expansion results: focus on Vespucci normalization

Author Message
stefania
Project scientist
Send message
Joined: 24 Oct 18
Posts: 5
Credit: 0
RAC: 0
Italy
Message 3477 - Posted: 4 May 2026, 10:24:45 UTC

We (and especially you) generated two collections of Vitis expansion lists from two versions of the Vespucci transcriptomic dataset. We are now comparing these two collections.
To correctly interpret the impact of the increased number of experiments in the second Vespucci release, it is crucial to understand how different data normalization approaches affect the results. For this reason, we have built two new datasets, called tpm and legacy. These contain exactly the same experiments, normalized in the two ways mirroring the two Vespucci releases.
We kindly ask for your support in running some expansions and comparing the outputs.
Many thanks for your collaboration!

JaviF
Send message
Joined: 14 May 19
Posts: 44
Credit: 0
RAC: 0
Spain
Message 3478 - Posted: 5 May 2026, 7:29:52 UTC - in response to Message 3477.

Hi,

Thx for the update.

When are you planning to deliver the workunits? There is nothing still.

KR,
Javi F

stefania
Project scientist
Send message
Joined: 24 Oct 18
Posts: 5
Credit: 0
RAC: 0
Italy
Message 3479 - Posted: 5 May 2026, 10:11:18 UTC - in response to Message 3478.

Thank you! Valter is doing some benchmark, but he will send work units out quite soon!

cheers:)

Profile dskagcommunity
Avatar
Send message
Joined: 14 Jan 26
Posts: 3
Credit: 38,210
RAC: 456
Austria
Message 3480 - Posted: 5 May 2026, 12:07:11 UTC

Oh great to hear, cant wait for them <3
____________
---------- 24/7 Crunching since 2011 -----------
DSKAG Austria: http://www.dskag.at

Garrulus glandarius
Send message
Joined: 22 Jun 25
Posts: 21
Credit: 126,924
RAC: 1,088
Romania
Message 3481 - Posted: 6 May 2026, 19:54:26 UTC

I have my scripts ready to catch some of the tasks =)
____________

Garrulus glandarius
Send message
Joined: 22 Jun 25
Posts: 21
Credit: 126,924
RAC: 1,088
Romania
Message 3482 - Posted: 12 May 2026, 5:10:56 UTC

Any idea when we could expect the batch to drop? Any chance this week?
____________

Sgt. Joe
Send message
Joined: 21 Feb 22
Posts: 2
Credit: 1,254,872
RAC: 5
United States
Message 3487 - Posted: 15 May 2026, 22:51:13 UTC - in response to Message 3480.

They dropped 1024 on May 15.
Cheers
____________

Garrulus glandarius
Send message
Joined: 22 Jun 25
Posts: 21
Credit: 126,924
RAC: 1,088
Romania
Message 3489 - Posted: 25 May 2026, 6:32:22 UTC

Any updates on what's going on behind the scenes? Will there be more batches of similar size, or can we expect something bigger?
____________

Falconet
Send message
Joined: 21 Dec 16
Posts: 108
Credit: 3,097,794
RAC: 25
Portugal
Message 3490 - Posted: 26 May 2026, 11:33:58 UTC - in response to Message 3489.
Last modified: 26 May 2026, 11:34:49 UTC

Any updates on what's going on behind the scenes? Will there be more batches of similar size, or can we expect something bigger?


Got 54 on my PC this morning.
____________

Garrulus glandarius
Send message
Joined: 22 Jun 25
Posts: 21
Credit: 126,924
RAC: 1,088
Romania
Message 3491 - Posted: 26 May 2026, 12:17:13 UTC - in response to Message 3490.

Any updates on what's going on behind the scenes? Will there be more batches of similar size, or can we expect something bigger?


Got 54 on my PC this morning.


Yep, I caught the launch and filled my rigs!
____________


Post to thread

Message boards : Science : Comparing the two Vitis OneGenE expansion results: focus on Vespucci normalization


Main page · Your account · Message boards


Copyright © 2026 CNR-TN & UniTN