Transcriptome and translatome from Mus musculus
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martina
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Message 3351 - Posted: 13 Feb 2024, 10:48:48 UTC

Hello, we are a group of researchers from the Laboratory of translational architectomics, working on mechanisms at the basis of protein synthesis in neurodegenerative diseases.

We are working on a project which aims at identifying correlation between genes at the transcriptomic and translational levels. To do so, we need to perform mouse gene network expansion with RNA-Seq data and ribosome profiling (RiboSeq) from control samples of multiple tissues.

Profile [VENETO] boboviz
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Message 3355 - Posted: 14 Feb 2024, 7:52:32 UTC

Welcome back!!

Profile Bill F
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Message 3357 - Posted: 15 Feb 2024, 2:43:17 UTC - in response to Message 3351.

Yes ... Welcome back we have missed the Science work that your Project allowed us to work on.
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Profile Beyond
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Message 3360 - Posted: 16 Feb 2024, 17:11:46 UTC

Love the new work. More please! :-)

kotenok2000
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Message 3361 - Posted: 17 Feb 2024, 11:54:36 UTC

Can you increase workunit generation?

Falconet
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Message 3362 - Posted: 18 Feb 2024, 11:46:36 UTC - in response to Message 3361.

I think all the work has been distributed already.
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Message 3363 - Posted: 19 Feb 2024, 3:56:39 UTC

Initial announcement stated

"There will be a total of about 140k workunits (2x tasks), each one relatively fast, distributed in batches."

Bill F
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Falconet
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Message 3364 - Posted: 19 Feb 2024, 13:17:34 UTC

Looks like a new batch of work is available now. M. musculus 'OneGenE' (RIBOSEQ dataset)
Same amount of genes as the first.
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Profile valterc
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Message 3365 - Posted: 19 Feb 2024, 13:18:58 UTC - in response to Message 3364.
Last modified: 19 Feb 2024, 13:20:30 UTC

Yes. I just started with the second (and last, for now) dataset, please look at the "Science status" page (from the main menu) if you want to know how things are going on.

Krümel
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Message 3366 - Posted: 21 Feb 2024, 9:46:50 UTC - in response to Message 3365.

... (and last, for now) dataset,...


*cry*

kotenok2000
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Message 3367 - Posted: 4 Mar 2024, 18:18:40 UTC

Where are results?

Profile valterc
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Message 3369 - Posted: 8 Mar 2024, 11:48:08 UTC - in response to Message 3367.
Last modified: 8 Mar 2024, 11:48:24 UTC

Where are results?

The results, as usual, will be available to the scientific community only after a necessary validation phase, discussions, etc., usually at the same time of a publication... (it will take some time, usually months)

martina
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Message 3386 - Posted: 19 Apr 2024, 12:59:32 UTC

Hello, again! We are still processing results from the previous expansion.. :) In the meanwhile, new sets are going to be expanded, also from data obtained in the disease condition, to compare gene network expansion on the transcriptome and on the translatome in the disease context.


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Message boards : Science : Transcriptome and translatome from Mus musculus


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