Colorectal cancer genes characterization
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Message boards : Science : Colorectal cancer genes characterization

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Sara Finelli
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Message 1638 - Posted: 29 Nov 2019, 16:48:51 UTC

Hello, we are a group of students attending the "Laboratory of Biological Data Mining" course at the University of Trento.

We are working on a project aiming to identify correlation between genes and features of colorectal cancer. To do so, we need to perform human gene network expansion with a TCGA colorectal cancer dataset in the next few days.

For more information on this disease: https://en.wikipedia.org/wiki/Colorectal_cancer

Jim1348
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Message 1639 - Posted: 29 Nov 2019, 18:23:58 UTC - in response to Message 1638.

We are here to help. Students can come up with the most creative ideas. Give it a try.

kain
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Message 1641 - Posted: 29 Nov 2019, 20:39:33 UTC

Doing my best ;-)

Profile Buro87 [Lombardia]
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Message 1642 - Posted: 29 Nov 2019, 20:49:12 UTC - in response to Message 1641.

Wu named Hs_hs-giu are part of this project?

Profile valterc
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Message 1643 - Posted: 2 Dec 2019, 10:59:28 UTC - in response to Message 1642.
Last modified: 2 Dec 2019, 10:59:37 UTC

Wu named Hs_hs-giu are part of this project?

Not related with TCGA (the new workunits will have a name containing the tcga string).

Profile [VENETO] boboviz
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Message 1661 - Posted: 28 Dec 2019, 17:40:38 UTC - in response to Message 1643.

(the new workunits will have a name containing the tcga string)

Any news?? (i think after winter holidays)

Aurum
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Message 1662 - Posted: 1 Jan 2020, 23:06:17 UTC

Looking forward to crunching your project. Will your WUs come under the gene@home PC-IM category or will we need to select a new category in our preferences???
____________

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Message 1664 - Posted: 2 Jan 2020, 13:26:03 UTC - in response to Message 1662.

PC-IM is the algorithm we use for analyzing gene expression datasets of various organisms, and of different origin. The same algorithm/application can be used for various purposes, so no new category.

Profile [VENETO] boboviz
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Message 1666 - Posted: 14 Jan 2020, 9:02:41 UTC - in response to Message 1643.

the new workunits will have a name containing the tcga string

Yeap! Some TCGA in my queue...


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Message boards : Science : Colorectal cancer genes characterization


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