Vitis vinifera: new dataset
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Profile valterc
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Message 1089 - Posted: 29 Jun 2017, 9:08:20 UTC

We are starting to distribute another experiment (single gene expansion) with a new Vitis vinifera dataset. This dataset contains the same number of genes but a much larger expression data; running times are therefore expected to be much longer (around twice).

Col323
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Message 1091 - Posted: 7 Jul 2017, 12:52:58 UTC - in response to Message 1089.

Happy to keep crunching the work!

In the "Optimizations" thread, it was mentioned that Daniel's latest optimizations would be included in the official version toward the end of May. Has that happened yet?

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Message 1092 - Posted: 10 Jul 2017, 10:45:06 UTC - in response to Message 1091.

Happy to keep crunching the work!

In the "Optimizations" thread, it was mentioned that Daniel's latest optimizations would be included in the official version toward the end of May. Has that happened yet?

Not yet. We need a little bit more of testing before doing this.

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Message 1124 - Posted: 14 Oct 2017, 13:04:08 UTC - in response to Message 1092.

In the "Science Status" pae ihave saw that we complete around 310 genes a day.
just for curiosity, how many WU form 1 gene?

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Message 1125 - Posted: 16 Oct 2017, 10:00:48 UTC - in response to Message 1124.
Last modified: 16 Oct 2017, 10:02:44 UTC

In the "Science Status" pae ihave saw that we complete around 310 genes a day.
just for curiosity, how many WU form 1 gene?

This depends on the organism, the size of the expression dataset and other variables. In the current experiment (Vitis vinifera vvm2) any single gene expansion is made by 116 workunits.


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