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Profile valterc
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Message 505 - Posted: 10 Jun 2015, 10:43:53 UTC
Last modified: 22 Nov 2016, 13:42:39 UTC

Thanks to the invaluable contribution of the gene@home volunteers, we were able to perform a wide number of 'virtual experiments' using two different algorithms: PC-IM (PC Iterative Method) which is done with BOINC and NESRA (Network Expansion by Subsetting and Ranking Aggregation) which further analyzes BOINC results. The experiments were made on two organisms (Escherichia coli and Arabidopsis thaliana), expanding different Local Gene Networks. We also did experiments for optimizing the algorithms' parameters and for evaluating them.

We started to analyze the results, organize and present them to the international scientific community. Here follows the current list of our contributions, links to papers will be provided when published.


  • Discovering Candidates for Gene Network Expansion by Variable Subsetting and Ranking Aggregation
    Luca Erculiani, Francesca Galante, Caterina Gallo, Francesco Asnicar, Luca Masera, Paolo Morettin, Nadir Sella, Thomas Tolio, Giulia Malacarne, Kristof Engelen, Andrea Argentini, Valter Cavecchia, Claudio Moser, Enrico Blanzieri

    Poster, Network Biology SIG on July 10, 2015, preceding the main ISMB conference in Dublin (Ireland). http://f1000research.com/posters/4-562

  • Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing
    Francesco Asnicar, Luca Erculiani, Francesca Galante, Caterina Gallo, Luca Masera, Paolo Morettin, Nadir Sella, Stanislau Semeniuta, Thomas Tolio, Giulia Malacarne, Kristof Engelen, Andrea Argentini, Valter Cavecchia, Claudio Moser, Enrico Blanzieri

    Paper, The 13th IEEE International Symposium on Parallel and Distributed Processing with Applications (IEEE ISPA-15), to be held 20-22 August 2015 in Helsinki, Finland.

  • TN-Grid and gene@home project: Volunteer Computing for Bioinformatics
    Francesco Asnicar, Nadir Sella, Luca Masera, Paolo Morettin, Thomas Tolio, Stanislau Semeniuta, Claudio Moser, Enrico Blanzieri and Valter Cavecchia

    Paper, BOINC:FAST 2015 (BOINC: Fundamental & Applied Science & Technology), Second International Conference, 14 to 18 of September, 2015, Petrozavodsk, Republic of Karelia (Russia).

    Presentation: http://gene.disi.unitn.it/test/documents/Gene@Home.@BF15.pdf
    Proceedings: http://ceur-ws.org/Vol-1502/

  • NES2RA: Network expansion by stratified variable subsetting and ranking aggregation
    Francesco Asnicar, Luca Masera, Emanuela Coller, Caterina Gallo, Nadir Sella, Thomas Tolio, Paolo Morettin, Luca Erculiani, Francesca Galante, Stanislau Semeniuta, Giulia Malacarne, Kristof Engelen, Andrea Argentini, Valter Cavecchia, Claudio Moser and Enrico Blanzieri

    Paper, International Journal of High Performance Computing Applications (doi:10.1177/1094342016662508, http://hpc.sagepub.com/content/early/2016/08/17/1094342016662508.full.pdf+html)

Profile [VENETO] boboviz
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Message 507 - Posted: 10 Jun 2015, 17:32:28 UTC - in response to Message 505.

Well done, boys!!

Profile Phil1966
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Message 508 - Posted: 10 Jun 2015, 18:00:30 UTC

Great ! Thank You for the update :)

[AF>Le_Pommier] Jerome_C2005
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Message 509 - Posted: 11 Jun 2015, 7:10:30 UTC

Thanks to share this, happy to see that we are helpful :)

Profile [VENETO] boboviz
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Message 515 - Posted: 5 Oct 2015, 7:20:18 UTC - in response to Message 505.

Here follows the current list of our contributions, links to papers will be provided when published.


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