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Profile valterc
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Message 492 - Posted: 7 Mar 2015, 12:10:41 UTC
Last modified: 7 Mar 2015, 12:12:55 UTC

We are almost done with our current batch (E. Coli local gene network expansion for 10 networks). We will first analyze the results (this will take some time), then we will be able to choose the best, smaller set of algorithm parameters and use it for the other 100 networks we plan to expand, thus optimizing the computation. In the meantime we will start another experiment on Arabidopsis Thaliana but, before starting it, we need to wait until all the work on E. coli has been generated. This will be done manually, hopefully the next Monday.
For this reason there could be a shortage of workunits in this weekend.

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Message 497 - Posted: 12 Apr 2015, 17:54:59 UTC - in response to Message 492.

In the meantime we will start another experiment on Arabidopsis Thaliana but, before starting it, we need to wait until all the work on E. coli has been generated.


After Arabidopsis and E.Coli, do you plan others organism (like, for example, Drosophila)??

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Message 498 - Posted: 13 Apr 2015, 13:02:50 UTC - in response to Message 497.

In the meantime we will start another experiment on Arabidopsis Thaliana but, before starting it, we need to wait until all the work on E. coli has been generated.

After Arabidopsis and E.Coli, do you plan others organism (like, for example, Drosophila)??

We have still some work to do on the E. coli. We are also preparing another input dataset (expression data) for E. coli, which will be slightly different from the one we are using now, and want to run some experiments on it. For the near future we are thinking about other organisms, one of the candidates is the Vitis vinifera (which is of great interest here).

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Message 500 - Posted: 15 Apr 2015, 16:23:30 UTC - in response to Message 498.
Last modified: 16 Apr 2015, 8:59:23 UTC

In the meantime we will start another experiment on Arabidopsis Thaliana but, before starting it, we need to wait until all the work on E. coli has been generated.

After Arabidopsis and E.Coli, do you plan others organism (like, for example, Drosophila)??

We have still some work to do on the E. coli. We are also preparing another input dataset (expression data) for E. coli, which will be slightly different from the one we are using now, and want to run some experiments on it. For the near future we are thinking about other organisms, one of the candidates is the Vitis vinifera (which is of great interest here).

We are starting, right now, a new experiment on E. coli, ten selected Local Gene Networks with a new 'filtered' (slightly smaller) dataset.


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